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BCES Publications

[1] Fabiano Jares Contesini, Marcelo Vizoná Liberato, Marcelo Ventura Rubio, Felipe Calzado, Mariane Paludetti Zubieta, Diego Mauricio Riaño-Pachón, Fabio Marcio Squina, Fabricio Bracht, Munir S Skaf, and André Ricardo Damasio. Structural and functional characterization of a highly secreted α-l-arabinofuranosidase (gh62) from aspergillus nidulans grown on sugarcane bagasse. Biochimica et biophysica acta, 1865:1758--1769, December 2017. [ bib | DOI ]
[2] Adriana Oliveira Manfiolli, Patrícia Alves de Castro, Thaila Fernanda Dos Reis, Stephen Dolan, Sean Doyle, Gary Jones, Diego M Riaño Pachón, Mevlüt Ulaş, Luke M Noble, Derek J Mattern, Axel A Brakhage, Vito Valiante, Rafael Silva-Rocha, Ozgur Bayram, and Gustavo H Goldman. Aspergillus fumigatus protein phosphatase ppza is involved in iron assimilation, secondary metabolite production, and virulence. Cellular microbiology, 19, December 2017. [ bib | DOI ]
[3] F Mandelli, M B Couger, D A A Paixão, C B Machado, C M Carnielli, J A Aricetti, I Polikarpov, R Prade, C Caldana, A F Paes Leme, A Z Mercadante, D M Riaño-Pachón, and Fabio Marcio Squina. Thermal adaptation strategies of the extremophile bacterium thermus filiformis based on multi-omics analysis. Extremophiles : life under extreme conditions, 21:775--788, July 2017. [ bib | DOI ]
[4] Paula Macedo Nobile, Alexandra Bottcher, Juliana L S Mayer, Michael S Brito, Ivan A Dos Anjos, Marcos Guimarães de Andrade Landell, Renato Vicentini, Silvana Creste, Diego Mauricio Riaño-Pachón, and Paulo Mazzafera. Identification, classification and transcriptional profiles of dirigent domain-containing proteins in sugarcane. Molecular genetics and genomics : MGG, July 2017. [ bib | DOI ]
[5] Gustavo Pagotto Borin, Camila Cristina Sanchez, Eliane Silva de Santana, Guilherme Keppe Zanini, Renato Augusto Corrêa Dos Santos, Angélica de Oliveira Pontes, Aline Tieppo de Souza, Roberta Maria Menegaldo Tavares Soares Dal'Mas, Diego Mauricio Riaño-Pachón, Gustavo Henrique Goldman, and Juliana Velasco de Castro Oliveira. Comparative transcriptome analysis reveals different strategies for degradation of steam-exploded sugarcane bagasse by aspergillus niger and trichoderma reesei. BMC genomics, 18:501, June 2017. [ bib | DOI ]
[6] Renato Augusto Corrêa Dos Santos, Gustavo Henrique Goldman, and Diego Mauricio Riaño-Pachón. ploidyngs: Visually exploring ploidy with next generation sequencing data. Bioinformatics (Oxford, England), April 2017. [ bib | DOI ]
[7] Lilian Pereira Silva, Patrícia Alves de Castro, Thaila Fernanda Dos Reis, Mario Henrique Paziani, Márcia Regina Von Zeska Kress, Diego M Riaño-Pachón, Daisuke Hagiwara, Laure N A Ries, Neil Andrew Brown, and Gustavo H Goldman. Genome-wide transcriptome analysis of aspergillus fumigatus exposed to osmotic stress reveals regulators of osmotic and cell wall stresses that are saka(hog1) and mpkc dependent. Cellular microbiology, 19, April 2017. [ bib | DOI ]
[8] Thaila Fernanda Dos Reis, Benjamin M Nitsche, Pollyne Borborema Almeida de Lima, Leandro José de Assis, Laura Mellado, Steven D Harris, Vera Meyer, Renato A Corrêa Dos Santos, Diego M Riaño-Pachón, Laure Nicolas Annick Ries, and Gustavo H Goldman. The low affinity glucose transporter hxtb is also involved in glucose signalling and metabolism in aspergillus nidulans. Scientific reports, 7:45073, March 2017. [ bib | DOI ]
[9] Natalia Coutouné, Aline Tieppo Nogueira Mulato, Diego Mauricio Riaño-Pachón, and Juliana Velasco de Castro Oliveira. Draft genome sequence of saccharomyces cerevisiae barra grande (bg-1), a brazilian industrial bioethanol-producing strain. Genome announcements, 5, March 2017. [ bib | DOI ]
[10] Ronald P de Vries, Robert Riley, Ad Wiebenga, Guillermo Aguilar-Osorio, Sotiris Amillis, Cristiane Akemi Uchima, Gregor Anderluh, Mojtaba Asadollahi, Marion Askin, Kerrie Barry, Evy Battaglia, Özgür Bayram, Tiziano Benocci, Susanna A Braus-Stromeyer, Camila Caldana, David Cánovas, Gustavo C Cerqueira, Fusheng Chen, Wanping Chen, Cindy Choi, Alicia Clum, Renato Augusto Corrêa Dos Santos, André Ricardo de Lima Damásio, George Diallinas, Tamás Emri, Erzsébet Fekete, Michel Flipphi, Susanne Freyberg, Antonia Gallo, Christos Gournas, Rob Habgood, Matthieu Hainaut, María Laura Harispe, Bernard Henrissat, Kristiina S Hildén, Ryan Hope, Abeer Hossain, Eugenia Karabika, Levente Karaffa, Zsolt Karányi, Nada Kraševec, Alan Kuo, Harald Kusch, Kurt LaButti, Ellen L Lagendijk, Alla Lapidus, Anthony Levasseur, Erika Lindquist, Anna Lipzen, Antonio F Logrieco, Andrew MacCabe, Miia R Mäkelä, Iran Malavazi, Petter Melin, Vera Meyer, Natalia Mielnichuk, Márton Miskei, Ákos P Molnár, Giuseppina Mulé, Chew Yee Ngan, Margarita Orejas, Erzsébet Orosz, Jean Paul Ouedraogo, Karin M Overkamp, Hee-Soo Park, Giancarlo Perrone, Francois Piumi, Peter J Punt, Arthur F J Ram, Ana Ramón, Stefan Rauscher, Eric Record, Diego Mauricio Riaño-Pachón, Vincent Robert, Julian Röhrig, Roberto Ruller, Asaf Salamov, Nadhira S Salih, Rob A Samson, Erzsébet Sándor, Manuel Sanguinetti, Tabea Schütze, Kristina Sepčić, Ekaterina Shelest, Gavin Sherlock, Vicky Sophianopoulou, Fabio M Squina, Hui Sun, Antonia Susca, Richard B Todd, Adrian Tsang, Shiela E Unkles, Nathalie van de Wiele, Diana van Rossen-Uffink, Juliana Velasco de Castro Oliveira, Tammi C Vesth, Jaap Visser, Jae-Hyuk Yu, Miaomiao Zhou, Mikael R Andersen, David B Archer, Scott E Baker, Isabelle Benoit, Axel A Brakhage, Gerhard H Braus, Reinhard Fischer, Jens C Frisvad, Gustavo H Goldman, Jos Houbraken, Berl Oakley, István Pócsi, Claudio Scazzocchio, Bernhard Seiboth, Patricia A vanKuyk, Jennifer Wortman, Paul S Dyer, and Igor V Grigoriev. Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus aspergillus. Genome biology, 18:28, February 2017. [ bib | DOI ]
[11] DM Riaño Pachón and L Mattiello. Draft genome sequencing of the sugarcane hybrid sp80-3280 [version 2; referees: 2 approved]. F1000Research, 6(861), 2017. [ bib | DOI ]
[12] Bruno L Mello, Anna M Alessi, Diego M Riaño-Pachón, Eduardo R deAzevedo, Francisco E G Guimarães, Melissa C Espirito Santo, Simon McQueen-Mason, Neil C Bruce, and Igor Polikarpov. Targeted metatranscriptomics of compost-derived consortia reveals a gh11 exerting an unusual exo-1,4-β-xylanase activity. Biotechnology for biofuels, 10:254, 2017. [ bib | DOI ]
[13] Renato Augusto Correa Santos, Gustavo H. Goldman, and Diego Mauricio Riaño Pachón. ploidyngs: Visually exploring ploidy with next generation sequencing data. BioRxiv, November 2016. [ bib | DOI | http ]
[14] Neil Andrew Brown, Laure N A. Ries, Thaila F. Reis, Ranjith Rajendran, Renato Augusto Corrêa Dos Santos, Gordon Ramage, Diego Mauricio Riaño-Pachón, and Gustavo H. Goldman. Rnaseq reveals hydrophobins that are involved in the adaptation of aspergillus nidulans to lignocellulose. Biotechnol Biofuels, 9:145, 2016. [ bib | DOI | http ]
[15] Patrícia Alves de Castro, Thaila Fernanda Dos Reis, Stephen K. Dolan, Adriana Oliveira Manfiolli, Neil Andrew Brown, Gary W. Jones, Sean Doyle, Diego M. Riaño-Pachón, Fábio Márcio Squina, Camila Caldana, Ashutosh Singh, Maurizio Del Poeta, Daisuke Hagiwara, Rafael Silva-Rocha, and Gustavo H. Goldman. The aspergillus fumigatus scha(sch9) kinase modulates saka(hog1) map kinase activity and it is essential for virulence. Mol Microbiol, Aug 2016. [ bib | DOI | http ]
[16] Flavia V. Winck, David O Páez Melo, Diego M. Riaño-Pachón, Marina C M. Martins, Camila Caldana, and Andrés F González Barrios. Analysis of sensitive co2 pathways and genes related to carbon uptake and accumulation in chlamydomonas reinhardtii through genomic scale modeling and experimental validation. Front Plant Sci, 7:43, 2016. [ bib | DOI | http ]
[17] Flavia V Winck, Diego M Riaño-Pachón, and Telma T Franco. Editorial: Advances in microalgae biology and sustainable applications. Frontiers in plant science, 7:1385, 2016. [ bib | DOI ]
[18] Renato Augusto Corrêa Dos Santos, Andresa Aparecida Berretta, Hernane da Silva Barud, Sidney José Lima Ribeiro, Laura Natalia González-García, Tiago Domingues Zucchi, Gustavo H. Goldman, and Diego M. Riaño-Pachón. Draft genome sequence of komagataeibacter intermedius strain af2, a producer of cellulose, isolated from kombucha tea. Genome Announc, 3(6), 2015. [ bib | DOI | http ]
[19] Fernanda Mandelli, Brenda Oliveira Ramires, Matthew Brian Couger, Douglas A A. Paixão, Cesar M. Camilo, Igor Polikarpov, Rolf Prade, Diego M. Riaño-Pachón, and Fabio M. Squina. Draft genome sequence of the thermophile thermus filiformis atcc 43280, producer of carotenoid-(di)glucoside-branched fatty acid (di)esters and source of hyperthermostable enzymes of biotechnological interest. Genome Announc, 3(3), 2015. [ bib | DOI | http ]
[20] Marçal Mariné, Neil Andrew Brown, Diego Mauricio Riaño-Pachón, and Gustavo Henrique Goldman. On and under the skin: Emerging basidiomycetous yeast infections caused by trichosporon species. PLoS Pathog, 11(7):e1004982, Jul 2015. [ bib | DOI | http ]
[21] Lucia Mattiello, Diego Mauricio Riaño-Pachón, Marina Camara Mattos Martins, Larissa Prado da Cruz, Denis Bassi, Paulo Eduardo Ribeiro Marchiori, Rafael Vasconcelos Ribeiro, Mônica T Veneziano Labate, Carlos Alberto Labate, and Marcelo Menossi. Physiological and transcriptional analyses of developmental stages along sugarcane leaf. BMC Plant Biol, 15:300, 2015. [ bib | DOI | http ]
[22] Juan Pablo Rosas-Morales, Ximena Perez-Mancilla, Liliana López-Kleine, Dolly Montoya Castaño, and Diego Mauricio Riaño-Pachón. Draft genome sequences of clostridium strains native to colombia with the potential to produce solvents. Genome Announc, 3(3), 2015. [ bib | DOI | http ]
[23] Flavia V. Winck, Ana Carolina Prado Ribeiro, Romênia Ramos Domingues, Liu Yi Ling, Diego Mauricio Riaño-Pachón, César Rivera, Thaís Bianca Brandão, Adriele Ferreira Gouvea, Alan Roger Santos-Silva, Ricardo D. Coletta, and Adriana F. Paes Leme. Insights into immune responses in oral cancer through proteomic analysis of saliva and salivary extracellular vesicles. Sci Rep, 5:16305, 2015. [ bib | DOI | http ]
[24] Francisco Javier Buitrago-Flórez, Silvia Restrepo, and Diego Mauricio Riaño-Pachón. Identification of transcription factor genes and their correlation with the high diversity of stramenopiles. PLoS One, 9(11):e111841, 2014. [ bib | DOI | http ]
[25] Marco A. Cristancho, David Octavio Botero-Rozo, William Giraldo, Javier Tabima, Diego Mauricio Riaño-Pachón, Carolina Escobar, Yomara Rozo, Luis F. Rivera, Andrés Durán, Silvia Restrepo, Tamar Eilam, Yehoshua Anikster, and Alvaro L. Gaitán. Annotation of a hybrid partial genome of the coffee rust (hemileia vastatrix) contributes to the gene repertoire catalog of the pucciniales. Front Plant Sci, 5:594, 2014. [ bib | DOI | http ]
[26] Renato Augusto Corrêa Dos Santos, Andresa A. Berretta, Hernane da Silva Barud, Sidney José Lima Ribeiro, Laura Natalia González-García, Tiago Domingues Zucchi, Gustavo H. Goldman, and Diego M. Riaño-Pachón. Draft genome sequence of komagataeibacter rhaeticus strain af1, a high producer of cellulose, isolated from kombucha tea. Genome Announc, 2(4), 2014. [ bib | DOI | http ]
[27] Juliana Velasco de Castro Oliveira, Thuanny A. Borges, Renato Augusto Corrêa dos Santos, Larissa F D. Freitas, Carlos Augusto Rosa, Gustavo Henrique Goldman, and Diego Mauricio Riaño-Pachón. Pseudozyma brasiliensis sp. nov., a xylanolytic, ustilaginomycetous yeast species isolated from an insect pest of sugarcane roots. Int J Syst Evol Microbiol, 64(Pt 6):2159--2168, Jun 2014. [ bib | DOI | http ]
[28] Mohammad Amin Omidbakhshfard, Flavia Vischi Winck, Samuel Arvidsson, Diego M. Riaño-Pachón, and Bernd Mueller-Roeber. A step-by-step protocol for formaldehyde-assisted isolation of regulatory elements from arabidopsis thaliana. J Integr Plant Biol, 56(6):527--538, Jun 2014. [ bib | DOI | http ]
[29] Liliana López-Kleine, Andrés Pinzón, Diego Chaves, Silvia Restrepo, and Diego M. Riaño-Pachón. Chromosome 10 in the tomato plant carries clusters of genes responsible for field resistance/defence to phytophthora infestans. Genomics, 101(4):249--255, Apr 2013. [ bib | DOI | http ]
[30] Juliana Velasco de Castro Oliveira, Renato Augusto Corrêa Dos Santos, Thuanny A. Borges, Diego Mauricio Riaño-Pachón, and Gustavo Henrique Goldman. Draft genome sequence of pseudozyma brasiliensis sp. nov. strain ghg001, a high producer of endo-1,4-xylanase isolated from an insect pest of sugarcane. Genome Announc, 1(6), 2013. [ bib | DOI | http ]
[31] Betsy A. Read, Jessica Kegel, Mary J. Klute, Alan Kuo, Stephane C. Lefebvre, Florian Maumus, Christoph Mayer, John Miller, Adam Monier, Asaf Salamov, Jeremy Young, Maria Aguilar, Jean-Michel Claverie, Stephan Frickenhaus, Karina Gonzalez, Emily K. Herman, Yao-Cheng Lin, Johnathan Napier, Hiroyuki Ogata, Analissa F. Sarno, Jeremy Shmutz, Declan Schroeder, Colomban de Vargas, Frederic Verret, Peter von Dassow, Klaus Valentin, Yves Van de Peer, Glen Wheeler, Emiliania huxleyi Annotation Consortium  , Joel B. Dacks, Charles F. Delwiche, Sonya T. Dyhrman, Gernot Glöckner, Uwe John, Thomas Richards, Alexandra Z. Worden, Xiaoyu Zhang, and Igor V. Grigoriev. Pan genome of the phytoplankton emiliania underpins its global distribution. Nature, 499(7457):209--213, Jul 2013. [ bib | DOI | http ]
[32] Flavia Vischi Winck, Flavia Vischi Winck, Samuel Arvidsson, Diego Mauricio Riaño-Pachón, Sabrina Hempel, Aneta Koseska, Zoran Nikoloski, David Alejandro Urbina Gomez, Jens Rupprecht, and Bernd Mueller-Roeber. Genome-wide identification of regulatory elements and reconstruction of gene regulatory networks of the green alga chlamydomonas reinhardtii under carbon deprivation. PLoS One, 8(11):e79909, 2013. [ bib | DOI | http ]
[33] Ingo Dreyer, Judith Lucia Gomez-Porras, Diego Mauricio Riaño-Pachón, Rainer Hedrich, and Dietmar Geiger. Molecular evolution of slow and quick anion channels (slacs and quacs/almts). Front Plant Sci, 3:263, 2012. [ bib | DOI | http ]
[34] Judith Lucia Gomez-Porras, Diego Mauricio Riaño-Pachón, Begoña Benito, Rosario Haro, Kamil Sklodowski, Alonso Rodríguez-Navarro, and Ingo Dreyer. Phylogenetic analysis of k(+) transporters in bryophytes, lycophytes, and flowering plants indicates a specialization of vascular plants. Front Plant Sci, 3:167, 2012. [ bib | DOI | http ]
[35] Flavia V. Winck, Diego M. Riaño-Pachón, Frederik Sommer, Jens Rupprecht, and Bernd Mueller-Roeber. The nuclear proteome of the green alga chlamydomonas reinhardtii. Proteomics, 12(1):95--100, Jan 2012. [ bib | DOI | http ]
[36] Jo Ann Banks, Tomoaki Nishiyama, Mitsuyasu Hasebe, John L. Bowman, Michael Gribskov, Claude dePamphilis, Victor A. Albert, Naoki Aono, Tsuyoshi Aoyama, Barbara A. Ambrose, Neil W. Ashton, Michael J. Axtell, Elizabeth Barker, Michael S. Barker, Jeffrey L. Bennetzen, Nicholas D. Bonawitz, Clint Chapple, Chaoyang Cheng, Luiz Gustavo Guedes Correa, Michael Dacre, Jeremy DeBarry, Ingo Dreyer, Marek Elias, Eric M. Engstrom, Mark Estelle, Liang Feng, Cédric Finet, Sandra K. Floyd, Wolf B. Frommer, Tomomichi Fujita, Lydia Gramzow, Michael Gutensohn, Jesper Harholt, Mitsuru Hattori, Alexander Heyl, Tadayoshi Hirai, Yuji Hiwatashi, Masaki Ishikawa, Mineko Iwata, Kenneth G. Karol, Barbara Koehler, Uener Kolukisaoglu, Minoru Kubo, Tetsuya Kurata, Sylvie Lalonde, Kejie Li, Ying Li, Amy Litt, Eric Lyons, Gerard Manning, Takeshi Maruyama, Todd P. Michael, Koji Mikami, Saori Miyazaki, Shin-ichi Morinaga, Takashi Murata, Bernd Mueller-Roeber, David R. Nelson, Mari Obara, Yasuko Oguri, Richard G. Olmstead, Naoko Onodera, Bent Larsen Petersen, Birgit Pils, Michael Prigge, Stefan A. Rensing, Diego Mauricio Riaño-Pachón, Alison W. Roberts, Yoshikatsu Sato, Henrik Vibe Scheller, Burkhard Schulz, Christian Schulz, Eugene V. Shakirov, Nakako Shibagaki, Naoki Shinohara, Dorothy E. Shippen, Iben Sørensen, Ryo Sotooka, Nagisa Sugimoto, Mamoru Sugita, Naomi Sumikawa, Milos Tanurdzic, Günter Theissen, Peter Ulvskov, Sachiko Wakazuki, Jing-Ke Weng, William W G T. Willats, Daniel Wipf, Paul G. Wolf, Lixing Yang, Andreas D. Zimmer, Qihui Zhu, Therese Mitros, Uffe Hellsten, Dominique Loqué, Robert Otillar, Asaf Salamov, Jeremy Schmutz, Harris Shapiro, Erika Lindquist, Susan Lucas, Daniel Rokhsar, and Igor V. Grigoriev. The selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 332(6032):960--963, May 2011. [ bib | DOI | http ]
[37] Johannes Rohrmann, Takayuki Tohge, Rob Alba, Sonia Osorio, Camila Caldana, Ryan McQuinn, Samuel Arvidsson, Margaretha J. van der Merwe, Diego Mauricio Riaño-Pachón, Bernd Mueller-Roeber, Zhangjun Fei, Adriano Nunes Nesi, James J. Giovannoni, and Alisdair R. Fernie. Combined transcription factor profiling, microarray analysis and metabolite profiling reveals the transcriptional control of metabolic shifts occurring during tomato fruit development. Plant J, 68(6):999--1013, Dec 2011. [ bib | DOI | http ]
[38] Daniel Lang, Benjamin Weiche, Gerrit Timmerhaus, Sandra Richardt, Diego M. Riaño-Pachón, Luiz G G. Corrêa, Ralf Reski, Bernd Mueller-Roeber, and Stefan A. Rensing. Genome-wide phylogenetic comparative analysis of plant transcriptional regulation: a timeline of loss, gain, expansion, and correlation with complexity. Genome Biol Evol, 2:488--503, 2010. [ bib | DOI | http ]
[39] Paulino Pérez-Rodríguez, Diego Mauricio Riaño-Pachón, Luiz Gustavo Guedes Corrêa, Stefan A. Rensing, Birgit Kersten, and Bernd Mueller-Roeber. Plntfdb: updated content and new features of the plant transcription factor database. Nucleic Acids Res, 38(Database issue):D822--D827, Jan 2010. [ bib | DOI | http ]
[40] Diego Mauricio Riaño-Pachón, Sabrina Kleessen, Jost Neigenfind, Pawel Durek, Elke Weber, Wolfgang R. Engelsberger, Dirk Walther, Joachim Selbig, Waltraud X. Schulze, and Birgit Kersten. Proteome-wide survey of phosphorylation patterns affected by nuclear dna polymorphisms in arabidopsis thaliana. BMC Genomics, 11:411, 2010. [ bib | DOI | http ]
[41] Diego Mauricio Riaño-Pachón, Axel Nagel, Jost Neigenfind, Robert Wagner, Rico Basekow, Elke Weber, Bernd Mueller-Roeber, Svenja Diehl, and Birgit Kersten. Gabipd: the gabi primary database--a plant integrative 'omics' database. Nucleic Acids Res, 37(Database issue):D954--D959, Jan 2009. [ bib | DOI | http ]
[42] Diego Mauricio Riaño-Pachón, Luiz Gustavo Guedes Corrêa, Raúl Trejos-Espinosa, and Bernd Mueller-Roeber. Green transcription factors: a chlamydomonas overview. Genetics, 179(1):31--39, May 2008. [ bib | DOI | http ]
[43] Samuel Arvidsson, Miroslaw Kwasniewski, Diego Mauricio Riaño-Pachón, and Bernd Mueller-Roeber. Quantprime--a flexible tool for reliable high-throughput primer design for quantitative pcr. BMC Bioinformatics, 9:465, 2008. [ bib | DOI | http ]
[44] S. Balazadeh, D. M. Riaño-Pachón, and B. Mueller-Roeber. Transcription factors regulating leaf senescence in arabidopsis thaliana. Plant Biol (Stuttg), 10 Suppl 1:63--75, Sep 2008. [ bib | DOI | http ]
[45] Luiz Gustavo Guedes Corrêa, Diego Mauricio Riaño-Pachón, Carlos Guerra Schrago, Renato Vicentini dos Santos, Bernd Mueller-Roeber, and Michel Vincentz. The role of bzip transcription factors in green plant evolution: adaptive features emerging from four founder genes. PLoS One, 3(8):e2944, 2008. [ bib | DOI | http ]
[46] Judith L. Gómez-Porras, Diego Mauricio Riaño-Pachón, Ingo Dreyer, Jorge E. Mayer, and Bernd Mueller-Roeber. Genome-wide analysis of aba-responsive elements abre and ce3 reveals divergent patterns in arabidopsis and rice. BMC Genomics, 8:260, 2007. [ bib | DOI | http ]
[47] Sabeeha S. Merchant, Simon E. Prochnik, Olivier Vallon, Elizabeth H. Harris, Steven J. Karpowicz, George B. Witman, Astrid Terry, Asaf Salamov, Lillian K. Fritz-Laylin, Laurence Maréchal-Drouard, Wallace F. Marshall, Liang-Hu Qu, David R. Nelson, Anton A. Sanderfoot, Martin H. Spalding, Vladimir V. Kapitonov, Qinghu Ren, Patrick Ferris, Erika Lindquist, Harris Shapiro, Susan M. Lucas, Jane Grimwood, Jeremy Schmutz, Pierre Cardol, Heriberto Cerutti, Guillaume Chanfreau, Chun-Long Chen, Valérie Cognat, Martin T. Croft, Rachel Dent, Susan Dutcher, Emilio Fernández, Hideya Fukuzawa, David González-Ballester, Diego González-Halphen, Armin Hallmann, Marc Hanikenne, Michael Hippler, William Inwood, Kamel Jabbari, Ming Kalanon, Richard Kuras, Paul A. Lefebvre, Stéphane D. Lemaire, Alexey V. Lobanov, Martin Lohr, Andrea Manuell, Iris Meier, Laurens Mets, Maria Mittag, Telsa Mittelmeier, James V. Moroney, Jeffrey Moseley, Carolyn Napoli, Aurora M. Nedelcu, Krishna Niyogi, Sergey V. Novoselov, Ian T. Paulsen, Greg Pazour, Saul Purton, Jean-Philippe Ral, Diego Mauricio Riaño-Pachón, Wayne Riekhof, Linda Rymarquis, Michael Schroda, David Stern, James Umen, Robert Willows, Nedra Wilson, Sara Lana Zimmer, Jens Allmer, Janneke Balk, Katerina Bisova, Chong-Jian Chen, Marek Elias, Karla Gendler, Charles Hauser, Mary Rose Lamb, Heidi Ledford, Joanne C. Long, Jun Minagawa, M Dudley Page, Junmin Pan, Wirulda Pootakham, Sanja Roje, Annkatrin Rose, Eric Stahlberg, Aimee M. Terauchi, Pinfen Yang, Steven Ball, Chris Bowler, Carol L. Dieckmann, Vadim N. Gladyshev, Pamela Green, Richard Jorgensen, Stephen Mayfield, Bernd Mueller-Roeber, Sathish Rajamani, Richard T. Sayre, Peter Brokstein, Inna Dubchak, David Goodstein, Leila Hornick, Y Wayne Huang, Jinal Jhaveri, Yigong Luo, Diego Martínez, Wing Chi Abby Ngau, Bobby Otillar, Alexander Poliakov, Aaron Porter, Lukasz Szajkowski, Gregory Werner, Kemin Zhou, Igor V. Grigoriev, Daniel S. Rokhsar, and Arthur R. Grossman. The chlamydomonas genome reveals the evolution of key animal and plant functions. Science, 318(5848):245--250, Oct 2007. [ bib | DOI | http ]
[48] Diego Mauricio Riaño-Pachón, Slobodan Ruzicic, Ingo Dreyer, and Bernd Mueller-Roeber. Plntfdb: an integrative plant transcription factor database. BMC Bioinformatics, 8:42, 2007. [ bib | DOI | http ]
[49] Diego Mauricio Riaño-Pachón, Ingo Dreyer, and Bernd Mueller-Roeber. Orphan transcripts in arabidopsis thaliana: identification of several hundred previously unrecognized genes. Plant J, 43(2):205--212, Jul 2005. [ bib | DOI | http ]
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